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Ytterbium in PDB, part 1 (files: 1-40), PDB 1c5k-3fty

Experimental structures of coordination spheres of Ytterbium (Yb) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Ytterbium atoms. PDB files: 1-40 (PDB 1c5k-3fty).
  1. 1c5k (Yb: 1) - The Structure of Tolb, An Essential Component of the Tol- Dependent Translocation System and Its Interactions with the Translocation Domain of Colicin E9
  2. 1cnt (Yb: 1) - Ciliary Neurotrophic Factor
  3. 1ggy (Yb: 8) - Human Factor XIII with Ytterbium Bound in the Ion Site
  4. 1gw6 (Yb: 1) - Structure of Leukotriene A4 Hydrolase D375N Mutant
    Other atoms: Zn (1);
  5. 1h19 (Yb: 1) - Structure of [E271Q] Leukotriene A4 Hydrolase
    Other atoms: Zn (1);
  6. 1hs6 (Yb: 3) - Structure of Leukotriene A4 Hydrolase Complexed with Bestatin.
    Other atoms: Zn (1);
  7. 1k90 (Yb: 3) - Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 3' Deoxy- Atp
    Other atoms: Ca (6);
  8. 1lvc (Yb: 3) - Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 2' Deoxy, 3' Anthraniloyl Atp
    Other atoms: Ca (6);
  9. 1ncg (Yb: 1) - Structural Basis of Cell-Cell Adhesion By Cadherins
  10. 1nch (Yb: 2) - Structural Basis of Cell-Cell Adhesion By Cadherins
  11. 1pk0 (Yb: 3) - Crystal Structure of the EF3-Cam Complexed with Pmeapp
    Other atoms: Ca (6);
  12. 1s26 (Yb: 3) - Structure of Anthrax Edema Factor-Calmodulin-Alpha,Beta- Methyleneadenosine 5'-Triphosphate Complex Reveals An Alternative Mode of Atp Binding to the Catalytic Site
    Other atoms: Ca (6);
  13. 1sk6 (Yb: 9) - Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin, 3',5' Cyclic Amp (Camp), and Pyrophosphate
    Other atoms: Ca (6);
  14. 1sqm (Yb: 1) - Structure of [R563A] Leukotriene A4 Hydrolase
    Other atoms: Zn (1);
  15. 1ytt (Yb: 4) - Yb Substituted Subtilisin Fragment of Mannose Binding Protein-A (Sub-Mbp-A), Mad Structure at 110K
  16. 1z1y (Yb: 9) - Crystal Structure of Methylated PVS25, An Ookinete Protein From Plasmodium Vivax
  17. 2bop (Yb: 2) - Crystal Structure at 1.7 Angstroms of the Bovine Papillomavirus-1 E2 Dna-Binding Domain Bound to Its Dna Target
  18. 2k62 (Yb: 7) - uc(Nmr) Solution Structure of the Supramolecular Adduct Between A Liver Cytosolic Bile Acid Binding Protein and A Bile Acid-Based Gd(III)-Chelate
  19. 2o6n (Yb: 1) - RH4B: Designed Right-Handed Coiled Coil Tetramer with All Biological Amino Acids
  20. 2r59 (Yb: 1) - Leukotriene A4 Hydrolase Complexed with Inhibitor RB3041
    Other atoms: Zn (1);
  21. 2vj8 (Yb: 3) - Complex of Human Leukotriene A4 Hydrolase with A Hydroxamic Acid Inhibitor
    Other atoms: Zn (1);
  22. 3b7r (Yb: 1) - Leukotriene A4 Hydrolase Complexed with Inhibitor RB3040
    Other atoms: Zn (1);
  23. 3b7s (Yb: 1) - [E296Q]LTA4H in Complex with Rsr Substrate
    Other atoms: Zn (1);
  24. 3b7t (Yb: 2) - [E296Q]LTA4H in Complex with Arg-Ala-Arg Substrate
    Other atoms: Zn (1);
  25. 3b7u (Yb: 3) - Leukotriene A4 Hydrolase Complexed with Kelatorphan
    Other atoms: Zn (1);
  26. 3cho (Yb: 1) - Crystal Structure of Leukotriene A4 Hydrolase in Complex with 2-Amino-N-[4-(Phenylmethoxy)Phenyl]-Acetamide
    Other atoms: Zn (1);
  27. 3chp (Yb: 1) - Crystal Structure of Leukotriene A4 Hydrolase in Complex with (3S)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl) Amino]Butanoic Acid
    Other atoms: Zn (1);
  28. 3chq (Yb: 3) - Crystal Structure of Leukotriene A4 Hydrolase in Complex with N5-[4-(Phenylmethoxy)Phenyl]-L-Glutamine
    Other atoms: Zn (1);
  29. 3chr (Yb: 1) - Crystal Structure of Leukotriene A4 Hydrolase in Complex with 4-Amino-N-[4-(Phenylmethoxy)Phenyl]-Butanamide
    Other atoms: Zn (1);
  30. 3chs (Yb: 3) - Crystal Structure of Leukotriene A4 Hydrolase in Complex with (2S)-2-Amino-5-[[4-[(2S)-2-Hydroxy-2-Phenyl- Ethoxy]Phenyl]Amino]-5-Oxo-Pentanoic Acid
    Other atoms: Zn (1);
  31. 3fh5 (Yb: 2) - Leukotriene A4 Hydrolase Complexed with Inhibitor (2R)-2-[(4- Benzylphenoxy)Methyl]Pyrrolidine.
    Other atoms: Zn (1);
  32. 3fh7 (Yb: 3) - Leukotriene A4 Hydrolase Complexed with Inhibitor 4-[(2S)-2-{[4-(4- Chlorophenoxy)Phenoxy]Methyl}Pyrrolidin-1-Yl]Butanoate.
    Other atoms: Cl (1); Zn (1);
  33. 3fh8 (Yb: 3) - Leukotriene A4 Hydrolase Complexed with Inhibitor 1-[2-(4- Benzylphenoxy)Ethyl]Pyrrolidine.
    Other atoms: Zn (1);
  34. 3fhe (Yb: 3) - Leukotriene A4 Hydrolase Complexed with Inhibitor N-[3-(4- Benzylphenoxy)Propyl]-N-Methyl-Beta-Alanine.
    Other atoms: Zn (1);
  35. 3fts (Yb: 1) - Leukotriene A4 Hydrolase in Complex with Resveratrol
    Other atoms: Zn (1);
  36. 3ftu (Yb: 1) - Leukotriene A4 Hydrolase in Complex with Dihydroresveratrol
    Other atoms: Zn (1);
  37. 3ftv (Yb: 2) - Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline
    Other atoms: Zn (1);
  38. 3ftw (Yb: 1) - Leukotriene A4 Hydrolase in Complex with Fragments N- (Pyridin-3-Ylmethyl)Aniline and Acetate
    Other atoms: Zn (1);
  39. 3ftx (Yb: 3) - Leukotriene A4 Hydrolase in Complex with Dihydroresveratrol and Bestatin
    Other atoms: Zn (1);
  40. 3fty (Yb: 1) - Leukotriene A4 Hydrolase in Complex with Fragment 3- (Benzyloxy)Pyridin-2-Amine
    Other atoms: Zn (1);
Page generated: Sat Sep 25 14:59:35 2021

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