Ytterbium in PDB 2bop: Crystal Structure at 1.7 Angstroms of the Bovine Papillomavirus-1 E2 Dna-Binding Domain Bound to Its Dna Target

The structure of Crystal Structure at 1.7 Angstroms of the Bovine Papillomavirus-1 E2 Dna-Binding Domain Bound to Its Dna Target, PDB code: 2bop was solved by R.S.Hegde, S.R.Grossman, L.A.Laimins, P.B.Sigler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.00 / 1.70
Space group	R 3 2
Cell size a, b, c (Å), α, β, γ (°)	64.600, 64.600, 64.600, 61.80, 61.80, 61.80
R / Rfree (%)	n/a / n/a

The binding sites of Ytterbium atom in the Crystal Structure at 1.7 Angstroms of the Bovine Papillomavirus-1 E2 Dna-Binding Domain Bound to Its Dna Target (pdb code 2bop). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total 2 binding sites of Ytterbium where determined in the Crystal Structure at 1.7 Angstroms of the Bovine Papillomavirus-1 E2 Dna-Binding Domain Bound to Its Dna Target, PDB code: 2bop:
Jump to Ytterbium binding site number: 1; 2;

Ytterbium binding site 1 out of 2 in the Crystal Structure at 1.7 Angstroms of the Bovine Papillomavirus-1 E2 Dna-Binding Domain Bound to Its Dna Target


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Crystal Structure at 1.7 Angstroms of the Bovine Papillomavirus-1 E2 Dna-Binding Domain Bound to Its Dna Target within 5.0Å range: probe atom residue distance (Å) B Occ B:Yb500 b:71.0 occ:1.00 O B:HOH611 4.2 33.7 1.0 O4 B:DT11 4.8 14.2 1.0

Ytterbium binding site 2 out of 2 in the Crystal Structure at 1.7 Angstroms of the Bovine Papillomavirus-1 E2 Dna-Binding Domain Bound to Its Dna Target


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 2 of Crystal Structure at 1.7 Angstroms of the Bovine Papillomavirus-1 E2 Dna-Binding Domain Bound to Its Dna Target within 5.0Å range: probe atom residue distance (Å) B Occ A:Yb499 b:20.2 occ:1.00 OD1 A:ASN366 2.0 18.8 1.0 OD1 A:ASP365 2.3 18.2 1.0 OE2 A:GLU369 2.3 22.2 1.0 OE1 A:GLU369 2.4 19.1 1.0 CD A:GLU369 2.6 17.6 1.0 CG A:ASN366 3.2 17.3 1.0 CG A:ASP365 3.2 17.9 1.0 OD2 A:ASP365 3.6 20.7 1.0 CB A:ASN366 4.0 16.9 1.0 ND2 A:ASN366 4.1 19.3 1.0 CG A:GLU369 4.1 17.1 1.0 N A:ASN366 4.2 15.3 1.0 N A:ASP365 4.6 12.7 1.0 CB A:ASP365 4.6 17.0 1.0 O A:HOH596 4.6 27.1 1.0 CA A:ASN366 4.7 15.3 1.0 C A:ASP365 4.8 15.4 1.0 CA A:ASP365 4.9 14.8 1.0 CB A:GLU369 4.9 14.1 1.0 O A:HOH559 4.9 35.4 1.0

R.S.Hegde, S.R.Grossman, L.A.Laimins, P.B.Sigler. Crystal Structure at 1.7 A of the Bovine Papillomavirus-1 E2 Dna-Binding Domain Bound to Its Dna Target. Nature V. 359 505 1992.
ISSN: ISSN 0028-0836
PubMed: 1328886
DOI: 10.1038/359505A0