Atomistry » Ytterbium » PDB 1c5k-3fty » 1hs6
Atomistry »
  Ytterbium »
    PDB 1c5k-3fty »
      1hs6 »

Ytterbium in PDB 1hs6: Structure of Leukotriene A4 Hydrolase Complexed with Bestatin.

Enzymatic activity of Structure of Leukotriene A4 Hydrolase Complexed with Bestatin.

All present enzymatic activity of Structure of Leukotriene A4 Hydrolase Complexed with Bestatin.:
3.3.2.6;

Protein crystallography data

The structure of Structure of Leukotriene A4 Hydrolase Complexed with Bestatin., PDB code: 1hs6 was solved by M.M.G.M.Thunnissen, P.N.Nordlund, J.Z.Haeggstrom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.95
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.600, 133.500, 83.400, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1hs6:

The structure of Structure of Leukotriene A4 Hydrolase Complexed with Bestatin. also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Ytterbium Binding Sites:

The binding sites of Ytterbium atom in the Structure of Leukotriene A4 Hydrolase Complexed with Bestatin. (pdb code 1hs6). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total 3 binding sites of Ytterbium where determined in the Structure of Leukotriene A4 Hydrolase Complexed with Bestatin., PDB code: 1hs6:
Jump to Ytterbium binding site number: 1; 2; 3;

Ytterbium binding site 1 out of 3 in 1hs6

Go back to Ytterbium Binding Sites List in 1hs6
Ytterbium binding site 1 out of 3 in the Structure of Leukotriene A4 Hydrolase Complexed with Bestatin.


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Structure of Leukotriene A4 Hydrolase Complexed with Bestatin. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Yb801

b:18.1
occ:1.00
OD1 A:ASP481 2.2 22.3 1.0
O A:HOH1260 2.2 13.9 1.0
OD2 A:ASP481 2.4 19.4 1.0
CG A:ASP481 2.6 26.7 1.0
OD1 A:ASP482 4.1 16.9 1.0
CB A:ASP481 4.1 22.4 1.0
OD2 A:ASP482 4.3 17.6 1.0
CG A:ASP482 4.6 14.6 1.0
CB A:LYS479 4.6 17.7 1.0
CD A:LYS479 4.8 28.8 1.0

Ytterbium binding site 2 out of 3 in 1hs6

Go back to Ytterbium Binding Sites List in 1hs6
Ytterbium binding site 2 out of 3 in the Structure of Leukotriene A4 Hydrolase Complexed with Bestatin.


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 2 of Structure of Leukotriene A4 Hydrolase Complexed with Bestatin. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Yb802

b:46.5
occ:0.50
YB A:YB803 3.4 30.2 0.5
OE1 A:GLU107 3.8 0.0 1.0
O A:HOH1409 3.9 54.6 1.0
OE2 A:GLU107 4.1 86.4 1.0
CD A:GLU107 4.3 0.0 1.0

Ytterbium binding site 3 out of 3 in 1hs6

Go back to Ytterbium Binding Sites List in 1hs6
Ytterbium binding site 3 out of 3 in the Structure of Leukotriene A4 Hydrolase Complexed with Bestatin.


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 3 of Structure of Leukotriene A4 Hydrolase Complexed with Bestatin. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Yb803

b:30.2
occ:0.50
OE2 A:GLU107 2.2 86.4 1.0
CD A:GLU107 2.7 0.0 1.0
OE1 A:GLU107 2.7 0.0 1.0
O A:HOH1409 2.9 54.6 1.0
YB A:YB802 3.4 46.5 0.5
CG A:GLU107 4.0 64.9 1.0
O A:HOH1303 4.7 41.0 1.0

Reference:

M.M.Thunnissen, P.Nordlund, J.Z.Haeggstrom. Crystal Structure of Human Leukotriene A(4) Hydrolase, A Bifunctional Enzyme in Inflammation. Nat.Struct.Biol. V. 8 131 2001.
ISSN: ISSN 1072-8368
PubMed: 11175901
DOI: 10.1038/84117
Page generated: Sat Oct 12 20:54:23 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy