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Ytterbium in PDB 2o6n: RH4B: Designed Right-Handed Coiled Coil Tetramer with All Biological Amino Acids

Protein crystallography data

The structure of RH4B: Designed Right-Handed Coiled Coil Tetramer with All Biological Amino Acids, PDB code: 2o6n was solved by M.Sales, T.Alber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.36 / 1.10
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 38.356, 38.356, 49.679, 90.00, 90.00, 90.00
R / Rfree (%) 11.5 / 13.2

Ytterbium Binding Sites:

The binding sites of Ytterbium atom in the RH4B: Designed Right-Handed Coiled Coil Tetramer with All Biological Amino Acids (pdb code 2o6n). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total only one binding site of Ytterbium was determined in the RH4B: Designed Right-Handed Coiled Coil Tetramer with All Biological Amino Acids, PDB code: 2o6n:

Ytterbium binding site 1 out of 1 in 2o6n

Go back to Ytterbium Binding Sites List in 2o6n
Ytterbium binding site 1 out of 1 in the RH4B: Designed Right-Handed Coiled Coil Tetramer with All Biological Amino Acids


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of RH4B: Designed Right-Handed Coiled Coil Tetramer with All Biological Amino Acids within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Yb201

b:11.5
occ:1.00
OE21 A:CGU19 2.2 16.1 1.0
OE12 A:CGU19 2.2 15.3 1.0
OE21 A:CGU23 2.2 10.3 1.0
OE12 A:CGU23 2.4 11.4 1.0
CD2 A:CGU19 3.2 15.0 1.0
CD1 A:CGU19 3.2 15.2 1.0
CD1 A:CGU23 3.3 9.3 1.0
CD2 A:CGU23 3.3 9.2 1.0
O A:HOH304 3.3 21.3 0.5
HG A:CGU19 3.4 13.1 1.0
CG A:CGU19 3.6 12.6 1.0
HG A:CGU23 3.7 8.4 1.0
CG A:CGU23 3.7 8.3 1.0
O A:HOH301 3.8 19.8 1.0
O A:HOH288 4.1 43.1 1.0
O A:HOH251 4.2 39.5 1.0
OE22 A:CGU19 4.3 19.3 1.0
OE11 A:CGU23 4.3 11.9 1.0
OE11 A:CGU19 4.3 18.4 1.0
OE22 A:CGU23 4.4 10.9 1.0
O A:HOH277 4.8 49.3 1.0

Reference:

M.Sales, J.J.Plecs, J.M.Holton, T.Alber. Structure of A Designed, Right-Handed Coiled-Coil Tetramer Containing All Biological Amino Acids. Protein Sci. V. 16 2224 2007.
ISSN: ISSN 0961-8368
PubMed: 17766380
DOI: 10.1110/PS.062702907
Page generated: Wed Dec 16 02:41:31 2020

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