Ytterbium in PDB 1nch: Structural Basis of Cell-Cell Adhesion By Cadherins

The structure of Structural Basis of Cell-Cell Adhesion By Cadherins, PDB code: 1nch was solved by L.Shapiro, A.M.Fannon, P.D.Kwong, A.Thompson, M.S.Lehmann, G.Grubel, J.-F.Legrand, J.Als-Nielsen, D.R.Colman, W.A.Hendrickson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	5.00 / 2.10
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	79.730, 79.730, 74.960, 90.00, 90.00, 120.00
R / Rfree (%)	22.4 / 30.9

The binding sites of Ytterbium atom in the Structural Basis of Cell-Cell Adhesion By Cadherins (pdb code 1nch). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total 2 binding sites of Ytterbium where determined in the Structural Basis of Cell-Cell Adhesion By Cadherins, PDB code: 1nch:
Jump to Ytterbium binding site number: 1; 2;

Ytterbium binding site 1 out of 2 in the Structural Basis of Cell-Cell Adhesion By Cadherins


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Structural Basis of Cell-Cell Adhesion By Cadherins within 5.0Å range: probe atom residue distance (Å) B Occ A:Yb500 b:56.5 occ:1.00 OE2 A:GLU69 1.8 38.4 1.0 OE2 A:GLU11 1.8 28.5 1.0 OE1 A:GLU69 2.1 42.1 1.0 CD A:GLU69 2.3 37.0 1.0 CD A:GLU11 2.5 22.6 1.0 OE1 A:GLU11 2.5 28.4 1.0 OD1 A:ASP67 3.3 34.4 1.0 CG A:GLU69 3.8 34.6 1.0 CG A:GLU11 4.0 24.6 1.0 CG A:ASP67 4.2 31.6 1.0 OD2 A:ASP67 4.7 36.9 1.0 N A:ARG68 4.7 28.3 1.0 CB A:GLU69 4.8 30.0 1.0 N A:GLU69 4.8 28.7 1.0 CB A:ARG68 4.8 31.8 1.0 OD1 A:ASN12 4.9 37.3 1.0 CB A:GLU11 5.0 32.4 1.0

Ytterbium binding site 2 out of 2 in the Structural Basis of Cell-Cell Adhesion By Cadherins


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 2 of Structural Basis of Cell-Cell Adhesion By Cadherins within 5.0Å range: probe atom residue distance (Å) B Occ B:Yb600 b:59.0 occ:1.00 O B:HOH676 1.7 75.3 1.0 OE2 B:GLU11 1.8 39.8 1.0 OE2 B:GLU69 1.8 44.4 1.0 OE1 B:GLU69 1.9 46.6 1.0 CD B:GLU69 2.2 43.2 1.0 CD B:GLU11 2.5 37.5 1.0 OE1 B:GLU11 2.5 34.7 1.0 OD1 B:ASP100 3.4 45.2 1.0 O B:ASP100 3.7 43.9 1.0 CG B:GLU69 3.7 40.3 1.0 OD1 B:ASP67 3.9 40.9 1.0 CG B:GLU11 3.9 38.5 1.0 CG B:ASP100 4.2 42.0 1.0 CG B:ARG68 4.4 31.3 1.0 CB B:ASP100 4.5 40.7 1.0 CB B:GLU69 4.6 32.8 1.0 N B:GLU69 4.8 29.9 1.0 C B:ASP100 4.8 41.5 1.0 O B:HOH610 4.8 45.1 1.0 N B:ARG68 4.9 27.2 1.0 CB B:GLU11 4.9 38.9 1.0 OD1 B:ASN12 5.0 37.8 1.0

L.Shapiro, A.M.Fannon, P.D.Kwong, A.Thompson, M.S.Lehmann, G.Grubel, J.F.Legrand, J.Als-Nielsen, D.R.Colman, W.A.Hendrickson. Structural Basis of Cell-Cell Adhesion By Cadherins. Nature V. 374 327 1995.
ISSN: ISSN 0028-0836
PubMed: 7885471
DOI: 10.1038/374327A0