Ytterbium in PDB 1lvc: Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 2' Deoxy, 3' Anthraniloyl Atp

Enzymatic activity of Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 2' Deoxy, 3' Anthraniloyl Atp

Protein crystallography data

Other elements in 1lvc:

Ytterbium Binding Sites:

Ytterbium binding site 1 out of 3 in 1lvc

Ytterbium Binding Sites List in 1lvc

Ytterbium binding site 1 out of 3 in the Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 2' Deoxy, 3' Anthraniloyl Atp


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 2' Deoxy, 3' Anthraniloyl Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Yb901 b:0.3 occ:1.00 OD1 A:ASP491 2.1 47.8 1.0 NE2 A:HIS577 2.1 28.5 1.0 O1A A:DOT999 2.2 77.0 1.0 OD2 A:ASP491 2.4 48.5 1.0 CG A:ASP491 2.6 45.8 1.0 OD2 A:ASP493 2.9 39.2 1.0 OD1 A:ASP493 2.9 39.2 1.0 CE1 A:HIS577 3.1 29.9 1.0 CD2 A:HIS577 3.2 31.1 1.0 PA A:DOT999 3.2 77.3 1.0 CG A:ASP493 3.2 38.7 1.0 O2A A:DOT999 3.8 77.7 1.0 O3A A:DOT999 3.8 72.6 1.0 O2B A:DOT999 3.9 67.7 1.0 O A:LYS346 4.0 26.9 1.0 CB A:ASP491 4.0 40.6 1.0 ND1 A:HIS577 4.2 28.2 1.0 CG A:HIS577 4.3 28.7 1.0 O5' A:DOT999 4.5 75.7 1.0 CE A:LYS346 4.5 33.3 1.0 PB A:DOT999 4.6 69.2 1.0 O A:GLY347 4.6 38.2 1.0 CB A:ASP493 4.7 36.2 1.0 CG A:LYS346 4.8 34.6 1.0 O A:ASP491 4.9 36.2 1.0 CA A:ASP491 4.9 36.5 1.0 C A:ASP491 5.0 35.6 1.0

Ytterbium binding site 2 out of 3 in 1lvc

Ytterbium Binding Sites List in 1lvc

Ytterbium binding site 2 out of 3 in the Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 2' Deoxy, 3' Anthraniloyl Atp


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 2 of Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 2' Deoxy, 3' Anthraniloyl Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Yb902 b:0.9 occ:1.00 CE1 B:HIS577 1.8 36.9 1.0 OD1 B:ASP493 2.0 41.1 1.0 NE2 B:HIS577 2.3 37.4 1.0 OD1 B:ASP491 2.3 32.7 1.0 CG B:ASP493 2.7 39.2 1.0 OD2 B:ASP493 2.8 43.1 1.0 ND1 B:HIS577 3.0 39.0 1.0 CG B:ASP491 3.2 31.7 1.0 OD2 B:ASP491 3.3 31.5 1.0 CD2 B:HIS577 3.6 39.0 1.0 CG B:HIS577 3.9 38.7 1.0 CB B:ASP493 4.2 34.8 1.0 O B:LYS346 4.4 30.9 1.0 CB B:ASP491 4.6 30.5 1.0 CE B:LYS346 4.7 36.8 1.0 CA B:ASP493 4.9 31.7 1.0

Ytterbium binding site 3 out of 3 in 1lvc

Ytterbium Binding Sites List in 1lvc

Ytterbium binding site 3 out of 3 in the Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 2' Deoxy, 3' Anthraniloyl Atp


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 3 of Crystal Structure of the Adenylyl Cyclase Domain of Anthrax Edema Factor (Ef) in Complex with Calmodulin and 2' Deoxy, 3' Anthraniloyl Atp within 5.0Å range: probe atom residue distance (Å) B Occ C:Yb903 b:0.6 occ:1.00 NE2 C:HIS577 2.1 33.0 1.0 OD1 C:ASP491 2.2 47.9 1.0 OD2 C:ASP491 2.3 48.5 1.0 O1A C:DOT1999 2.5 69.8 1.0 CG C:ASP491 2.5 45.1 1.0 OD1 C:ASP493 2.6 43.4 1.0 OD2 C:ASP493 2.6 41.8 1.0 CE1 C:HIS577 2.9 33.2 1.0 CG C:ASP493 2.9 39.5 1.0 CD2 C:HIS577 3.2 33.7 1.0 PA C:DOT1999 3.9 68.2 1.0 CB C:ASP491 4.0 40.3 1.0 O2B C:DOT1999 4.1 55.1 1.0 ND1 C:HIS577 4.1 32.7 1.0 CG C:HIS577 4.3 32.4 1.0 O C:LYS346 4.3 29.1 1.0 CB C:ASP493 4.3 35.2 1.0 O3A C:DOT1999 4.5 62.0 1.0 CA C:ASP493 4.7 32.6 1.0 O2A C:DOT1999 4.7 68.4 1.0 O C:ASP491 4.7 36.4 1.0 C C:ASP491 4.8 35.0 1.0 CA C:ASP491 4.8 36.1 1.0 N C:ASP493 4.9 32.3 1.0 C5B C:DOT1999 4.9 74.7 1.0 O5' C:DOT1999 4.9 70.4 1.0

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