Ytterbium in PDB 3ftv: Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline

All present enzymatic activity of Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline:
3.3.2.6;

The structure of Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline, PDB code: 3ftv was solved by D.R.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	78.124, 87.000, 99.328, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 20.6

The structure of Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Ytterbium atom in the Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline (pdb code 3ftv). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total 2 binding sites of Ytterbium where determined in the Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline, PDB code: 3ftv:
Jump to Ytterbium binding site number: 1; 2;

Ytterbium binding site 1 out of 2 in the Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline within 5.0Å range: probe atom residue distance (Å) B Occ A:Yb702 b:13.2 occ:1.00 O A:HOH654 2.3 6.9 1.0 O A:HOH894 2.4 12.7 1.0 OD2 A:ASP481 2.5 11.4 1.0 OD1 A:ASP481 2.6 10.2 1.0 CG A:ASP481 2.9 11.8 1.0 CB A:ASP481 4.4 11.5 1.0 OD1 A:ASP482 4.5 13.7 1.0 OD2 A:ASP482 4.5 11.7 1.0 O A:HOH1009 4.5 12.7 1.0 O A:HOH1042 4.7 26.7 1.0 CG A:ASP482 4.8 12.6 1.0 CB A:LYS479 4.8 10.2 1.0

Ytterbium binding site 2 out of 2 in the Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 2 of Leukotriene A4 Hydrolase in Complex with Fragment N- (Pyridin-3-Ylmethyl)Aniline within 5.0Å range: probe atom residue distance (Å) B Occ A:Yb703 b:71.6 occ:1.00 O A:HOH897 3.1 35.5 1.0 OE2 A:GLU46 4.2 27.9 1.0 OE1 A:GLU46 4.5 23.6 1.0 CD A:GLU46 4.7 22.4 1.0

D.R.Davies, B.Mamat, O.T.Magnusson, J.Christensen, M.H.Haraldsson, R.Mishra, B.Pease, E.Hansen, J.Singh, D.Zembower, H.Kim, A.S.Kiselyov, A.B.Burgin, M.E.Gurney, L.J.Stewart. Discovery of Leukotriene A4 Hydrolase Inhibitors Using Metabolomics Biased Fragment Crystallography. J.Med.Chem. V. 52 4694 2009.
ISSN: ISSN 0022-2623
PubMed: 19618939
DOI: 10.1021/JM900259H