Ytterbium in PDB 4r7l: Structure of Human Leukotriene A4 Hydrolase in Complex with Inhibitor H1

Enzymatic activity of Structure of Human Leukotriene A4 Hydrolase in Complex with Inhibitor H1

All present enzymatic activity of Structure of Human Leukotriene A4 Hydrolase in Complex with Inhibitor H1:
3.3.2.6;

Protein crystallography data

The structure of Structure of Human Leukotriene A4 Hydrolase in Complex with Inhibitor H1, PDB code: 4r7l was solved by P.Ouyang, K.Cui, W.Lu, J.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	30.19 / 1.66
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	77.916, 87.134, 99.285, 90.00, 90.00, 90.00
*R / R_free (%)*	15.3 / 18.5

Other elements in 4r7l:

The structure of Structure of Human Leukotriene A4 Hydrolase in Complex with Inhibitor H1 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Ytterbium Binding Sites:

The binding sites of Ytterbium atom in the Structure of Human Leukotriene A4 Hydrolase in Complex with Inhibitor H1 (pdb code 4r7l). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total only one binding site of Ytterbium was determined in the Structure of Human Leukotriene A4 Hydrolase in Complex with Inhibitor H1, PDB code: 4r7l:

Ytterbium binding site 1 out of 1 in 4r7l

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Ytterbium Binding Sites List in 4r7l

Ytterbium binding site 1 out of 1 in the Structure of Human Leukotriene A4 Hydrolase in Complex with Inhibitor H1

Mono view

Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Structure of Human Leukotriene A4 Hydrolase in Complex with Inhibitor H1 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Yb702 b:15.3 occ:1.00	OXT	A:ACT707	2.4	14.5	1.0
	OD1	A:ASP47	2.4	13.7	1.0
	O	A:HOH1063	2.4	13.3	1.0
	O	A:HOH1064	2.4	16.9	1.0
	OD2	A:ASP47	2.5	17.4	1.0
	O	A:ACT707	2.6	17.4	1.0
	O	A:HOH852	2.6	13.5	1.0
	CG	A:ASP47	2.7	13.8	1.0
	C	A:ACT707	2.8	14.7	1.0
	CB	A:ASP47	4.3	15.1	1.0
	CH3	A:ACT707	4.3	17.0	1.0
	N	A:ASN48	4.5	13.5	1.0
	O	A:HOH854	4.5	15.1	1.0
	O	A:HOH1037	4.7	21.2	1.0
	CB	A:ASN48	4.8	16.4	1.0
	O	A:HOH1066	4.8	27.5	1.0
	CA	A:ASP47	5.0	15.2	1.0

Reference:

P.Ouyang, K.Cui, W.Lu, J.Huang. Human Leukotriene A4 Hydrolase in Complex with Saha To Be Published.

Page generated: Tue Aug 19 18:53:21 2025

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