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Ytterbium in PDB 3fum: Leukotriene A4 Hydrolase in Complex with (R)-Pyridin-4-Yl[4-(2- Pyrrolidin-1-Ylethoxy)Phenyl]Methanol

Enzymatic activity of Leukotriene A4 Hydrolase in Complex with (R)-Pyridin-4-Yl[4-(2- Pyrrolidin-1-Ylethoxy)Phenyl]Methanol

All present enzymatic activity of Leukotriene A4 Hydrolase in Complex with (R)-Pyridin-4-Yl[4-(2- Pyrrolidin-1-Ylethoxy)Phenyl]Methanol:
3.3.2.6;

Protein crystallography data

The structure of Leukotriene A4 Hydrolase in Complex with (R)-Pyridin-4-Yl[4-(2- Pyrrolidin-1-Ylethoxy)Phenyl]Methanol, PDB code: 3fum was solved by D.R.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.254, 87.265, 99.287, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 24.6

Other elements in 3fum:

The structure of Leukotriene A4 Hydrolase in Complex with (R)-Pyridin-4-Yl[4-(2- Pyrrolidin-1-Ylethoxy)Phenyl]Methanol also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Ytterbium Binding Sites:

The binding sites of Ytterbium atom in the Leukotriene A4 Hydrolase in Complex with (R)-Pyridin-4-Yl[4-(2- Pyrrolidin-1-Ylethoxy)Phenyl]Methanol (pdb code 3fum). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total only one binding site of Ytterbium was determined in the Leukotriene A4 Hydrolase in Complex with (R)-Pyridin-4-Yl[4-(2- Pyrrolidin-1-Ylethoxy)Phenyl]Methanol, PDB code: 3fum:

Ytterbium binding site 1 out of 1 in 3fum

Go back to Ytterbium Binding Sites List in 3fum
Ytterbium binding site 1 out of 1 in the Leukotriene A4 Hydrolase in Complex with (R)-Pyridin-4-Yl[4-(2- Pyrrolidin-1-Ylethoxy)Phenyl]Methanol


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Leukotriene A4 Hydrolase in Complex with (R)-Pyridin-4-Yl[4-(2- Pyrrolidin-1-Ylethoxy)Phenyl]Methanol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Yb702

b:29.4
occ:1.00
 O A:ACT801 2.4 25.8 1.0
O A:HOH842 2.5 24.7 1.0
OD1 A:ASP481 2.5 26.1 1.0
O A:HOH628 2.6 16.6 1.0
O A:HOH841 2.6 18.4 1.0
OD2 A:ASP481 2.7 29.7 1.0
OXT A:ACT801 2.8 28.2 1.0
CG A:ASP481 2.9 29.1 1.0
C A:ACT801 3.0 27.3 1.0
OD2 A:ASP482 4.4 21.6 1.0
CB A:ASP481 4.4 26.6 1.0
OD1 A:ASP482 4.4 23.4 1.0
CH3 A:ACT801 4.5 25.3 1.0
O A:HOH671 4.5 13.8 1.0
O A:HOH761 4.5 26.2 1.0
CG A:ASP482 4.8 23.9 1.0
CB A:LYS479 4.8 23.1 1.0

Reference:

D.R.Davies, B.Mamat, O.T.Magnusson, J.Christensen, M.H.Haraldsson, R.Mishra, B.Pease, E.Hansen, J.Singh, D.Zembower, H.Kim, A.S.Kiselyov, A.B.Burgin, M.E.Gurney, L.J.Stewart. Discovery of Leukotriene A4 Hydrolase Inhibitors Using Metabolomics Biased Fragment Crystallography. J.Med.Chem. V. 52 4694 2009.
ISSN: ISSN 0022-2623
PubMed: 19618939
DOI: 10.1021/JM900259H
Page generated: Tue Aug 19 18:51:39 2025

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