Ytterbium in PDB 1ncg: Structural Basis of Cell-Cell Adhesion By Cadherins

The structure of Structural Basis of Cell-Cell Adhesion By Cadherins, PDB code: 1ncg was solved by L.Shapiro, A.M.Fannon, P.D.Kwong, A.Thompson, M.S.Lehmann, G.Grubel, J.-F.Legrand, J.Als-Nielsen, D.R.Colman, W.A.Hendrickson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	5.00 / 2.10
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	77.600, 77.600, 74.900, 90.00, 90.00, 120.00
R / Rfree (%)	21.7 / 20.1

The binding sites of Ytterbium atom in the Structural Basis of Cell-Cell Adhesion By Cadherins (pdb code 1ncg). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total only one binding site of Ytterbium was determined in the Structural Basis of Cell-Cell Adhesion By Cadherins, PDB code: 1ncg:

Ytterbium binding site 1 out of 1 in the Structural Basis of Cell-Cell Adhesion By Cadherins


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Structural Basis of Cell-Cell Adhesion By Cadherins within 5.0Å range: probe atom residue distance (Å) B Occ A:Yb500 b:33.0 occ:1.00 OE2 A:GLU69 1.7 21.9 1.0 O A:HOH562 2.0 28.1 1.0 OE2 A:GLU11 2.0 22.9 1.0 O A:HOH525 2.3 22.9 1.0 OE1 A:GLU11 2.3 22.1 1.0 OE1 A:GLU69 2.3 26.3 1.0 CD A:GLU69 2.3 23.3 1.0 CD A:GLU11 2.5 22.7 1.0 CG A:GLU69 3.8 21.5 1.0 CG A:GLU11 4.0 22.5 1.0 CG A:ARG68 4.2 24.3 1.0 O A:HOH611 4.2 48.2 1.0 ND2 A:ASN12 4.5 29.2 1.0 O A:HOH572 4.5 62.4 1.0 OD1 A:ASP67 4.5 21.4 1.0 O A:HOH656 4.5 40.2 1.0 O A:HOH657 4.6 56.1 1.0 O A:HOH588 4.7 23.9 1.0 CB A:GLU69 4.7 20.4 1.0 N A:ARG68 4.8 19.7 1.0 O A:HOH539 4.8 66.8 1.0 N A:GLU69 4.8 17.8 1.0 CD A:ARG68 4.9 26.0 1.0 CB A:GLU11 4.9 24.1 1.0

L.Shapiro, A.M.Fannon, P.D.Kwong, A.Thompson, M.S.Lehmann, G.Grubel, J.F.Legrand, J.Als-Nielsen, D.R.Colman, W.A.Hendrickson. Structural Basis of Cell-Cell Adhesion By Cadherins. Nature V. 374 327 1995.
ISSN: ISSN 0028-0836
PubMed: 7885471
DOI: 10.1038/374327A0