Ytterbium in PDB 1c5k: The Structure of Tolb, An Essential Component of the Tol- Dependent Translocation System and Its Interactions with the Translocation Domain of Colicin E9

The structure of The Structure of Tolb, An Essential Component of the Tol- Dependent Translocation System and Its Interactions with the Translocation Domain of Colicin E9, PDB code: 1c5k was solved by S.Carr, C.N.Penfold, V.Bamford, R.James, A.M.Hemmings, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	63.580, 40.190, 77.660, 90.00, 110.22, 90.00
R / Rfree (%)	23.4 / 27.1

The binding sites of Ytterbium atom in the The Structure of Tolb, An Essential Component of the Tol- Dependent Translocation System and Its Interactions with the Translocation Domain of Colicin E9 (pdb code 1c5k). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total only one binding site of Ytterbium was determined in the The Structure of Tolb, An Essential Component of the Tol- Dependent Translocation System and Its Interactions with the Translocation Domain of Colicin E9, PDB code: 1c5k:

Ytterbium binding site 1 out of 1 in the The Structure of Tolb, An Essential Component of the Tol- Dependent Translocation System and Its Interactions with the Translocation Domain of Colicin E9


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of The Structure of Tolb, An Essential Component of the Tol- Dependent Translocation System and Its Interactions with the Translocation Domain of Colicin E9 within 5.0Å range: probe atom residue distance (Å) B Occ A:Yb501 b:24.8 occ:1.00 OD1 A:ASP337 2.3 11.8 1.0 O A:HOH622 2.4 22.1 1.0 O A:HOH616 2.4 18.6 1.0 O A:HOH611 2.4 18.7 1.0 O A:HOH721 2.6 39.0 1.0 O A:HOH651 3.0 29.2 1.0 CG A:ASP337 3.3 17.4 1.0 OD2 A:ASP337 3.7 18.6 1.0 O A:ALA338 4.1 16.4 1.0 O A:HOH818 4.3 52.3 1.0 O A:HOH605 4.4 17.9 1.0 O A:ASP337 4.5 17.6 1.0 CB A:ASP337 4.6 15.4 1.0 C A:ASP337 4.6 15.9 1.0 O A:HOH802 4.6 35.0 1.0 CA A:ASP337 4.7 17.1 1.0 O A:PRO381 4.7 18.5 1.0 OD1 A:ASP339 4.7 28.1 1.0

S.Carr, C.N.Penfold, V.Bamford, R.James, A.M.Hemmings. The Structure of Tolb, An Essential Component of the Tol-Dependent Translocation System, and Its Protein-Protein Interaction with the Translocation Domain of Colicin E9. Structure Fold.Des. V. 8 57 2000.
ISSN: ISSN 0969-2126
PubMed: 10673426
DOI: 10.1016/S0969-2126(00)00079-4