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Ytterbium in PDB 7jwt: Crystal Structure of Human ALDH1A1 Bound to Compound (R)-28

Protein crystallography data

The structure of Crystal Structure of Human ALDH1A1 Bound to Compound (R)-28, PDB code: 7jwt was solved by T.D.Hurley, C.Buchman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 109.21 / 1.80
Space group P 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 109.205, 109.205, 83.219, 90, 90, 90
R / Rfree (%) 21.6 / 25.3

Other elements in 7jwt:

The structure of Crystal Structure of Human ALDH1A1 Bound to Compound (R)-28 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Ytterbium Binding Sites:

The binding sites of Ytterbium atom in the Crystal Structure of Human ALDH1A1 Bound to Compound (R)-28 (pdb code 7jwt). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total only one binding site of Ytterbium was determined in the Crystal Structure of Human ALDH1A1 Bound to Compound (R)-28, PDB code: 7jwt:

Ytterbium binding site 1 out of 1 in 7jwt

Go back to Ytterbium Binding Sites List in 7jwt
Ytterbium binding site 1 out of 1 in the Crystal Structure of Human ALDH1A1 Bound to Compound (R)-28


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Crystal Structure of Human ALDH1A1 Bound to Compound (R)-28 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Yb601

b:42.0
occ:1.00
O A:HOH1054 2.0 18.1 1.0
O A:HOH908 2.0 2.0 1.0
O A:HOH1041 2.1 2.0 1.0
O A:HOH1056 2.2 30.5 1.0
O A:HOH983 2.8 22.2 1.0
O A:HOH1086 3.2 29.9 1.0
OE2 A:GLU46 4.3 58.4 1.0
O A:ASN377 4.6 58.9 1.0
OE1 A:GLU46 4.7 60.1 1.0
CD A:GLU46 4.9 58.4 1.0

Reference:

B.C.Huddle, E.Grimley, M.Chtcherbinine, C.D.Buchman, C.Takahashi, B.Debnath, S.C.Mcgonigal, S.Mao, S.Li, J.Felton, S.Pan, B.Wen, D.Sun, N.Neamati, R.J.Buckanovich, T.D.Hurley, S.D.Larsen. Development of 2,5-Dihydro-4H-Pyrazolo[3,4-D]Pyrimidin-4-One Inhibitors of Aldehyde Dehydrogenase 1A (ALDH1A) As Potential Adjuncts to Ovarian Cancer Chemotherapy. Eur.J.Med.Chem. V. 211 13060 2020.
ISSN: ISSN 0223-5234
PubMed: 33341649
DOI: 10.1016/J.EJMECH.2020.113060
Page generated: Mon Jan 25 16:07:30 2021

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