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Ytterbium in PDB 5l2n: Structure of ALDH1A1 in Complex with BUC25

Enzymatic activity of Structure of ALDH1A1 in Complex with BUC25

All present enzymatic activity of Structure of ALDH1A1 in Complex with BUC25:
1.2.1.36;

Protein crystallography data

The structure of Structure of ALDH1A1 in Complex with BUC25, PDB code: 5l2n was solved by C.D.Buchman, T.D.Hurley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.70
Space group P 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 108.940, 108.940, 83.189, 90.00, 90.00, 90.00
R / Rfree (%) 21.5 / 24.3

Other elements in 5l2n:

The structure of Structure of ALDH1A1 in Complex with BUC25 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Ytterbium Binding Sites:

The binding sites of Ytterbium atom in the Structure of ALDH1A1 in Complex with BUC25 (pdb code 5l2n). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total only one binding site of Ytterbium was determined in the Structure of ALDH1A1 in Complex with BUC25, PDB code: 5l2n:

Ytterbium binding site 1 out of 1 in 5l2n

Go back to Ytterbium Binding Sites List in 5l2n
Ytterbium binding site 1 out of 1 in the Structure of ALDH1A1 in Complex with BUC25


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Structure of ALDH1A1 in Complex with BUC25 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Yb601

b:45.0
occ:1.00
O A:HOH957 1.9 3.7 1.0
O A:HOH879 2.2 8.8 1.0
O A:HOH926 2.2 36.2 1.0
O A:HOH939 2.2 45.4 1.0
O A:HOH968 2.3 42.2 1.0
O A:HOH963 2.3 43.4 1.0
O A:HOH900 2.3 51.8 1.0
O A:HOH943 2.3 34.2 1.0
O A:HOH891 2.3 38.6 1.0
O A:HOH974 4.2 41.3 0.5
O A:HOH961 4.4 40.4 1.0
O A:HOH741 4.5 36.0 1.0
OE2 A:GLU46 4.7 68.3 1.0
OE1 A:GLU46 4.7 70.3 1.0
O A:ASN377 5.0 81.2 1.0

Reference:

C.D.Buchman, T.D.Hurley. Inhibition of the Aldehyde Dehydrogenase 1/2 Family By Psoralen and Coumarin Derivatives. J. Med. Chem. V. 60 2439 2017.
ISSN: ISSN 1520-4804
PubMed: 28219011
DOI: 10.1021/ACS.JMEDCHEM.6B01825
Page generated: Sat Oct 12 21:20:08 2024

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