Ytterbium in PDB 5i2s: Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G Ectodomain

The structure of Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G Ectodomain, PDB code: 5i2s was solved by S.Roche, S.Bressanelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.94 / 3.00
Space group	P 6 2 2
Cell size a, b, c (Å), α, β, γ (°)	120.510, 120.510, 183.130, 90.00, 90.00, 120.00
R / Rfree (%)	18.1 / 24

The binding sites of Ytterbium atom in the Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G Ectodomain (pdb code 5i2s). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total 2 binding sites of Ytterbium where determined in the Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G Ectodomain, PDB code: 5i2s:
Jump to Ytterbium binding site number: 1; 2;

Ytterbium binding site 1 out of 2 in the Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G Ectodomain


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Yb504 b:0.2 occ:0.21 OE2 A:GLU286 2.4 71.5 1.0 CD A:GLU286 3.2 74.4 1.0 OE1 A:GLU286 3.2 80.7 1.0 OG A:SER282 4.5 58.9 1.0 CG A:GLU286 4.6 64.6 1.0

Ytterbium binding site 2 out of 2 in the Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G Ectodomain


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 2 of Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G Ectodomain within 5.0Å range: probe atom residue distance (Å) B Occ A:Yb505 b:0.1 occ:0.28 OE1 A:GLU191 2.8 0.7 1.0 OE2 A:GLU191 3.2 0.3 1.0 CD A:GLU191 3.4 0.7 1.0 CG A:GLU191 4.9 94.1 1.0

S.Roche, F.A.Rey, Y.Gaudin, S.Bressanelli. Structure of the Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G. Science V. 315 843 2007.
ISSN: ESSN 1095-9203
PubMed: 17289996
DOI: 10.1126/SCIENCE.1135710