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Ytterbium in PDB 4wb9: Human ALDH1A1 Complexed with Nadh

Enzymatic activity of Human ALDH1A1 Complexed with Nadh

All present enzymatic activity of Human ALDH1A1 Complexed with Nadh:
1.2.1.36;

Protein crystallography data

The structure of Human ALDH1A1 Complexed with Nadh, PDB code: 4wb9 was solved by C.A.Morgan, T.D.Hurley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 109.42 / 2.07
Space group P 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 109.415, 109.415, 83.448, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 23.4

Other elements in 4wb9:

The structure of Human ALDH1A1 Complexed with Nadh also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Ytterbium Binding Sites:

The binding sites of Ytterbium atom in the Human ALDH1A1 Complexed with Nadh (pdb code 4wb9). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total 2 binding sites of Ytterbium where determined in the Human ALDH1A1 Complexed with Nadh, PDB code: 4wb9:
Jump to Ytterbium binding site number: 1; 2;

Ytterbium binding site 1 out of 2 in 4wb9

Go back to Ytterbium Binding Sites List in 4wb9
Ytterbium binding site 1 out of 2 in the Human ALDH1A1 Complexed with Nadh


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Human ALDH1A1 Complexed with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Yb5502

b:35.9
occ:0.80
O A:HOH5815 1.8 17.1 1.0
O A:HOH5813 1.9 12.2 1.0
O A:HOH5814 2.2 39.3 1.0
O A:HOH5645 2.2 41.0 1.0
O A:HOH5677 2.3 34.4 1.0
O A:HOH5816 2.5 29.2 1.0
O A:HOH5675 2.5 19.7 1.0
OE2 A:GLU46 4.3 48.0 1.0
O A:ASN377 4.5 51.7 1.0
OE1 A:GLU46 4.8 55.0 1.0
CD A:GLU46 5.0 49.6 1.0

Ytterbium binding site 2 out of 2 in 4wb9

Go back to Ytterbium Binding Sites List in 4wb9
Ytterbium binding site 2 out of 2 in the Human ALDH1A1 Complexed with Nadh


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 2 of Human ALDH1A1 Complexed with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Yb5503

b:48.1
occ:0.80
O1N A:NAI5501 2.2 40.0 1.0
CL A:CL5504 2.2 59.4 0.8
O A:HOH5806 2.2 27.0 1.0
O2A A:NAI5501 2.4 36.7 1.0
CL A:CL5506 2.9 53.8 0.8
CL A:CL5505 3.0 56.2 0.8
PN A:NAI5501 3.5 46.3 1.0
PA A:NAI5501 3.6 39.0 1.0
O3 A:NAI5501 3.9 41.2 1.0
OE2 A:GLU349 4.1 72.0 1.0
OE1 A:GLU349 4.3 68.1 1.0
CG2 A:VAL250 4.6 49.1 1.0
O1A A:NAI5501 4.6 39.9 1.0
O2N A:NAI5501 4.6 48.0 1.0
C8A A:NAI5501 4.6 34.6 1.0
O5B A:NAI5501 4.6 40.8 1.0
O5D A:NAI5501 4.7 44.2 1.0
C5D A:NAI5501 4.7 45.4 1.0
CD A:GLU349 4.7 59.0 1.0
N7A A:NAI5501 4.9 35.1 1.0
OG A:SER247 4.9 34.9 1.0

Reference:

C.A.Morgan, T.D.Hurley. Development of A High-Throughput in Vitro Assay to Identify Selective Inhibitors For Human ALDH1A1. Chem.Biol.Interact. 2014.
ISSN: ISSN 0009-2797
PubMed: 25450233
DOI: 10.1016/J.CBI.2014.10.028
Page generated: Wed Dec 16 02:42:01 2020

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