Chemical elements
  Ytterbium
    Isotopes
    Energy
    Application
    Ytterbia
    PDB 1c5k-3fuh
    PDB 3fui-3fun
      3fui
      3fuj
      3fuk
      3ful
      3fum
      3fun

Ytterbium in the structure of Leukotriene A4 Hydrolase in Complex With Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone (pdb 3ful)






The binding sites of Ytterbium atom in the structure of Leukotriene A4 Hydrolase in Complex With Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone (pdb code 3ful). This binding sites where shown with 5.0 Angstroms radius around Ytterbium atom.
The 3ful structure was solved by D.R.DAVIES, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)50.0-2.4
Space groupP212121
a (A)78.337
b (A)87.083
c (A)99.766
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)18.3
Rfree (%)24.2


Ytterbium Binding Sites:

Ytterbium binding site 1 out of 1 in 3ful


Ytterbium binding site 1 out of 1 in 3ful
Click to enlarge
stereopicture of Ytterbium binding site 1 out of 1 in 3ful
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Ytterbium in the PDB 3ful. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Ytterbium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp47, A: Asn48, A: Hoh612, A: Hoh1125, A: Hoh1149,

conact list:


AtomAtomDistance (A)
YbCB A:Asp474.33
YbOD2 A:Asp472.35
YbOD1 A:Asp472.66
YbCG A:Asp472.83
YbN A:Asn484.50
YbCB A:Asn484.77
YbO A:Hoh6124.17
YbO A:Hoh11254.68
YbO A:Hoh11494.54

interactive model:




© Copyright 2008-2012 by atomistry.com