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Ytterbium in PDB 3ful: Leukotriene A4 Hydrolase in Complex with Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone

Enzymatic activity of Leukotriene A4 Hydrolase in Complex with Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone

All present enzymatic activity of Leukotriene A4 Hydrolase in Complex with Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone:
3.3.2.6;

Protein crystallography data

The structure of Leukotriene A4 Hydrolase in Complex with Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone, PDB code: 3ful was solved by D.R.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.39
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.337, 87.083, 99.766, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 24.2

Other elements in 3ful:

The structure of Leukotriene A4 Hydrolase in Complex with Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Ytterbium Binding Sites:

The binding sites of Ytterbium atom in the Leukotriene A4 Hydrolase in Complex with Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone (pdb code 3ful). This binding sites where shown within 5.0 Angstroms radius around Ytterbium atom.
In total only one binding site of Ytterbium was determined in the Leukotriene A4 Hydrolase in Complex with Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone, PDB code: 3ful:

Ytterbium binding site 1 out of 1 in 3ful

Go back to Ytterbium Binding Sites List in 3ful
Ytterbium binding site 1 out of 1 in the Leukotriene A4 Hydrolase in Complex with Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone


Mono view


Stereo pair view

A full contact list of Ytterbium with other atoms in the Yb binding site number 1 of Leukotriene A4 Hydrolase in Complex with Pyridin-4-Yl[4-(2-Pyrrolidin- 1-Ylethoxy)Phenyl]Methanone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Yb702

b:34.7
occ:1.00
 OD2 A:ASP47 2.3 25.9 1.0
OD1 A:ASP47 2.7 26.1 1.0
CG A:ASP47 2.8 28.2 1.0
O A:HOH612 4.2 29.0 1.0
CB A:ASP47 4.3 28.1 1.0
N A:ASN48 4.5 28.1 1.0
O A:HOH1149 4.5 21.4 1.0
O A:HOH1125 4.7 30.8 1.0
CB A:ASN48 4.8 26.7 1.0

Reference:

V.Sandanayaka, B.Mamat, R.K.Mishra, J.Winger, M.Krohn, L.M.Zhou, M.Keyvan, L.Enache, D.Sullins, E.Onua, J.Zhang, G.Halldorsdottir, H.Sigthorsdottir, A.Thorlaksdottir, G.Sigthorsson, M.Thorsteinnsdottir, D.R.Davies, L.J.Stewart, D.E.Zembower, T.Andresson, A.S.Kiselyov, J.Singh, M.E.Gurney. Discovery of 4-[(2S)-2-{[4-(4-Chlorophenoxy) Phenoxy]Methyl}-1-Pyrrolidinyl]Butanoic Acid (Dg-051) As A Novel Leukotriene A4 Hydrolase Inhibitor of Leukotriene B4 Biosynthesis. J.Med.Chem. V. 53 573 2010.
ISSN: ISSN 0022-2623
PubMed: 19950900
DOI: 10.1021/JM900838G
Page generated: Sat Oct 12 21:09:38 2024

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